Xymtx500. doc On-line document for XyMTeX in English (C) 1993, 1996, 1998, 2001, 2002, 2004, 2005, 2009, 2010 by Shinsak Fujita


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xymtx500.doc On-line document for XyMTeX in English Copyright (C) 1993, 1996, 1998, 2001, 2002, 2004, 2005, 2009, 2010 by Shinsak Fujita. All rights reserved. %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% xymtx406.doc On-line document for XyMTeX in English Copyright (C) 1993, 1996, 1998, 2001, 2002, 2004, 2005, 2009 by Shinsak Fujita. All rights reserved. %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% xymtx405.doc On-line document for XyMTeX in English Copyright (C) 1993, 1996, 1998, 2001, 2002, 2004, 2005, 2009 by Shinsak Fujita. All rights reserved. %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% xymtx404.doc On-line document for XyMTeX in English Copyright (C) 1993, 1996, 1998, 2001, 2002, 2004, 2005, 2009 by Shinsak Fujita. All rights reserved. %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% xymtx403.doc On-line document for XyMTeX in English Copyright (C) 1993, 1996, 1998, 2001, 2002, 2004,2005 by Shinsak Fujita. All rights reserved. %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% xymtx402.doc On-line document for XyMTeX in English Copyright (C) 1993, 1996, 1998, 2001, 2002, 2004 by Shinsak Fujita. All rights reserved. %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% xymtx401.doc On-line document for XyMTeX in English Copyright (C) 1993, 1996, 1998, 2001, 2002, 2004 by Shinsak Fujita. All rights reserved. %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% xymtx400.doc On-line document for XyMTeX in English Copyright (C) 1993, 1996, 1998, 2001, 2002 by Shinsak Fujita. All rights reserved. %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% xymtx300.doc On-line document for XyMTeX in English Copyright (C) 1993, 1996, 1998, 2001, 2002 by Shinsak Fujita. All rights reserved. %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% xymtx201.doc On-line document for XyMTeX in English Copyright (C) 1993, 1996, 1998,2001 by Shinsak Fujita. All rights reserved. %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% renamed and revised: xymtex2.doc Copyright (C) 1993, 1996, 1998 by Shinsak Fujita. All rights reserved. %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% renamed and revised: xymtex1.doc Copyright (C) 1993, 1996 by Shinsak Fujita. All rights reserved. %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% `XyMTeX' is a macro package for drawing chemical structural formulas. (1) Setting up The XyMTeX system has been frozen with ZIP. Set up according to the software situation of your computer. The following is only one example. Let the frozen package (xymtx500.zip) be placed in the c:\temp directory, where the package is melt with an appropriate software for melting. Thereby, the directory <\xymtex> is automatically created as the subdirectory of the c:\temp directory. And the following hierarchy of directories and files is generated. (For full document directories, visit the original deposit of the latest version at http://xymtex.com/ (Shonan Institute of Chemoinformatics and Mathematical Chemistry)). c---\temp---\xymtex ---\base -- xymtex.sty, xymtexps.sty, xymtexpdf.sty, | hetaromh.sty, hetarom.sty, ccycle.sty, | chemstr.sty, carom.sty, lowcycl.sty, aliphat.sty, | hcycle.sty, locant.sty, polymers.sty, chemist.sty | methylen.sty, fusering.sty, | sizeredc.sty, steroid.sty, bondcolor, assurelatexmode | lewisstruc.sty, chemtimes.sty | (dtx files and ins files) | |---\chemist---chemist.sty, assurechemist.sty | (dtx files and ins files) | |---\xymtxps---xymtx-ps.sty, chmst-ps.sty | (dtx files and ins files) | |---\xymtxpdf---xymtx-pdf.sty, chmst-pdf.sty | (dtx files and ins files) | |---\doc--- | |--\doc101--- xymtex.pdf (on-line document) | | | |--\doc200---xymtx200.pdf (on-line document) | | | |--\doc300---xymtx300.pdf (on-line document) | | | |--\doc401---xymtx401.pdf (on-line document) | | | |--\doc402403---xymtx402403.pdf (on-line document) | | | |--\doc404---xymtx404.pdf (on-line document) | | | |--\doc405406 | | |--xymtx405A.pdf (on-line document) | | |--xymtx405406B.pdf (on-line document) | | |--xymtx405406C.pdf (on-line document) | | | |--\doc500 | | |--xymtx500.pdf (on-line document) | | |--xymtx500PS.pdf (on-line document) | |---\readme--- | |---xymtx500.doc (this document) | | | |---xymtx500.jpn (on-line document in Japanese) | | | |---readm500.doc (notes in English) | | | |---readm500b.jpn (notes in Japanese) | Each of the package (sty) files in the \xymtex directory contains the macro codes of XymTeX commands. The specification of XyMTeX commands can be printed out after making a driving file. For the chemstr package as an example, commands to be typed in a prompt line are as follows: c:\temp> latex chemstr.ins c:\temp> latex chemstr.drv Thereby, you will obtain chemstr.dvi, which is a document of the chemstr package. The on-line manuals of the old versions (pdf files) stored in respective directories are effective even to the present version 5.00. The directory \doc500 contains two on-line documents, xymtx500.pdf and xymtx500PS.pdf, which have the same contents but are differently processed: xymtx500.pdf ---- processed by elatex and converted into PDF by dvipdfmx xymtx500PS.pdf ---- processed by elatex and converted into PS by dvips, then further converted into PDF by Adobe Distiller. They can be browsed with Adobe Reader. (2) Designating a serach path Do this task according to the situtation of your computer. The path searching tool (kpathsea) supported by usual TeX distributions has already decided several input directories (named ``tex'' or others). Hence, you should only place the resulting ``xymtex'' directry generated from xymtx500.zip in such an appropriate directory named ``tex'' or others (e.g., c:\usr\local\share\texmf\tex\latex). (3) Writing your manuscript According to remarkable expansion of computer capacities, all of the package files of the XyMTeX system can be loaded simultaneously in a tex file. You can adopt one of the three modes of the XyMTeX system. -1) For using the LaTeX picture environment and epic (TeX/LaTeX mode): \documentclass{article} \usepackage{xymtex} \usepackage{chemist} -2) For using under PostScript-compatible mode due to PSTricks techniques: \documentclass{article} \usepackage{xymtxps} \usepackage{chmst-ps} -3) For using under PDF-compatible mode due to pgf techniques: \documentclass{article} \usepackage{xymtxpdf} \usepackage{chmst-pdf} The include packages (chemist.sty, chmst-ps.sty, chemtimes.sty, chmst-pdf) should be loaded separately after xymtex.sty, xymtexps.sty, or xymtexpdf.sty is loaded. (4) Running LaTeX2e (or pLaTeX2e in Japanese) You should use XyMTeX commands within LaTeX to creat a dvi file. Note that, as for the PDF-compatible mode, you should use elatex (or eplatex in Japanese) during LaTeX processing. (5) PDF-compatible mode: Conversion of the dvi file into a PDF file (by e.g., dvipdfmx) (5') PostScript-compatible mode: --a) Conversion of the dvi file into a PostScript file (by e.g., dvips) --b) Conversion of the PostScript file into a PDF file (by e.g., Adobe Distiller) %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%(END)

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